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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs12745610 chr1:224573601 C/T 4.29E-5 192 13.58 13.37 5.25 KM Plot
LIHC rs12747286 chr1:224601770 T/C 0.000457 190 13.15 13.87 2.17 KM Plot
LIHC rs12751161 chr1:224605713 G/A 0.000103 190 13.55 13.37 5.25 KM Plot
LIHC rs12754832 chr1:224584167 A/G 0.000457 190 13.15 13.87 2.17 KM Plot
LIHC rs12755338 chr1:224640867 G/A 0.000112 191 13.57 13.37 5.25 KM Plot
LIHC rs12755816 chr1:224584723 A/T 5.01E-5 192 8.33 13.83 13.55 KM Plot
LIHC rs12758302 chr1:224616353 C/G 0.000457 190 13.15 13.87 2.17 KM Plot
LIHC rs12758579 chr1:224644167 C/T 0.000112 191 13.57 13.37 5.25 KM Plot
LIHC rs12759275 chr1:224580880 C/T 0.000457 190 13.15 13.87 2.17 KM Plot
LIHC rs12789816 chr11:6933160 G/T 2.18E-5 192 13.73 12.65 1.13 KM Plot
LIHC rs12793220 chr11:13205411 T/C 1.51E-6 185 13.08 14.85 1.87 KM Plot
LIHC rs12874585 chr13:24937185 T/G 0.000117 191 12.87 20.07 13.23 KM Plot
LIHC rs12901092 chr15:75374145 C/A 8.65E-5 187 12.97 13.17 13.55 KM Plot
LIHC rs12918999 chr16:20211467 T/C 2.43E-5 191 1.87 18.6 13.13 KM Plot
LIHC rs12926669 chr16:1502864 A/G 2.44E-5 192 13.15 20.27 1.87 KM Plot